Edit your theme's .info file and add a reference to your script:
scripts[] = scripts/scriptname.js Yup. (of course, there's many ways, and if working with a module, drupal_add_js( ) is probably a better choice). My first major Drupal jQuery project is nearing 1.0 completion, and it's definitely quite snazzy. The next step is to explore more animation features. Any favorites?